Date of Award

2021

Publisher

North Dakota State University

Document Type

Thesis

Degree Awarded

Master of Science (MS)

Department

Computer Science

College

Engineering

Faculty Advisor

Liu, Lu

Description

Chromatin interactions play increasingly important roles in three-dimensional genome organization and long-range gene regulation. Analyzing the three-dimensional structure of the plants is currently a growing field and we noticed that there is lack of computing resources on chromatin interactions for the plants. So, we are introducing a database of statistically significant chromatin interactions processed using Hi-C experimental approach. The users can search in the database using a set of genes or regions for a selected plant organism through a web browser and it lists down all the statistically significant chromatin interactions involved those genes or regions with the confidence scores, Gene Ontology information and pathway information. It serves as a computing resource for biologists and scientists who want to study plant genomes under the context of three-dimensional structure without any programming experience.

Rights

NDSU policy 190.6.2

Rights Link

https://www.ndsu.edu/fileadmin/policy/190.pdf

Handle Identifier

https://hdl.handle.net/10365/32602

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